PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028687001
Common NameGSBRNA2T00028687001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 232aa    MW: 25634.5 Da    PI: 9.8507
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028687001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.96.3e-42531521100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l+++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l
  GSBRNA2T00028687001  53 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLREVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAL 142
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++el ++++e
  GSBRNA2T00028687001 143 QSELTAVRSE 152
                          *****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.18152153IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-4253150IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKTKVLLRFL VLRERFELLR KKFKREADAW PHQMAGIRRP MSSPPGTLNT ITPCAACKLL  60
RRRCAQECPF SPYFSPHEPH KFASVHKVFG ASNVSKMLRE VPESQRADAA NSLVYEANVR  120
LRDPVYGCMG AISALQQQVQ ALQSELTAVR SEILKYKQRE AVATLILPSN SQVAGFHSSS  180
ISVIAPPPQT PSTPPQPTVA PPPPSSCVFS QPTTRALEYG DIENENNSYF G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028687001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738440.0AB473844.1 Arabidopsis thaliana ASL11 mRNA for ASYMMETRIC LEAVES2-like 11 protein, complete cds.
GenBankBT0252880.0BT025288.1 Arabidopsis thaliana At2g40470 mRNA, complete cds.
GenBankDQ4466130.0DQ446613.1 Arabidopsis thaliana clone pENTR221-At2g40470 LOB domain protein 15/lateral organ boundaries domain protein 15 (At2g40470) mRNA, complete cds.
GenBankDQ6530510.0DQ653051.1 Arabidopsis thaliana clone 0000012791_0000009246 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681220.11e-160PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T51e-122LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A078GJW31e-171A0A078GJW3_BRANA; BnaC03g22690D protein
STRINGAT2G40470.11e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-111LOB domain-containing protein 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]